NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210394_10002282

Scaffold Ga0210394_10002282


Overview

Basic Information
Taxon OID3300021420 Open in IMG/M
Scaffold IDGa0210394_10002282 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26742
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (77.42%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034638Metagenome / Metatranscriptome174N
F062940Metagenome / Metatranscriptome130Y
F072567Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0210394_1000228214F072567AGGCGGVGFSDYLRLHGREQRCYKHRMSVIGELGRKGLPRAIPSQELLRALGSSAAFCSWDAANSGVSDLKARWPFLFSHPLSGAKKKPAH
Ga0210394_1000228218F062940GGAGGMLNQRRWFEGVLIFLLLLSGDSSFAIPSHSAPIAALPQSAVPSQMIRYLKDLAREFAIDHTARWKHSAPQFGDVTTTISVAPINFDGCSVVWNQMQEGTTPGQLIYIETHRFEVPLATMDVKQITIEPVRAGQGERPGIEAGDYYVVRLQSMAGKNTVNVVDQNIVFNRKRGPVASVEEPMVSSAWVRVRTAEQAELLKARFEQAIAECIAAGQ
Ga0210394_1000228230F034638AGGAGMTHLRRAIVVLFFSCCIAPLAMGQLTLKVKIQSTPMERQLLFAKLNERAATHHIQFVLVESGFDYRVAYGVAGPVMTPYGPAAASASVTKVFDPSGAELFTFARDGRWTPDAAANATAKEIIKRIRRLRGL
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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