NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210394_10005442

Scaffold Ga0210394_10005442


Overview

Basic Information
Taxon OID3300021420 Open in IMG/M
Scaffold IDGa0210394_10005442 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14256
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (42.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002316Metagenome / Metatranscriptome572Y
F009111Metagenome / Metatranscriptome323Y
F098296Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0210394_1000544210F098296N/AMVKSFFRRLRRQPVVAAVLTWFSEQFATAPEDDYMRFSGDTIELERPPVVSVAPATFERQFMKLHAQGRFEEMWEMLAEDAQRAWGDREAFTRGMPRLDAETELLDMQVVSVAVVEGWTDQLHRRTYSNVARMVMRYRVRQQWREWTFDRQVHLIPAAGSWRTLVYPMGNKLAAS
Ga0210394_1000544218F009111N/AMGLMALGIGIWVVVYLAGHRGLDPAAQTIAGATVLISWSFALYVLVRRVRRGPQH
Ga0210394_100054423F002316N/AVTGGLRLEHDDQVTDGVCPRCGAPYESVIGVLYEDEEAIAIYRADLFDHFHRDPEPRAILSIAVGEWQDGTDHSDRCSAAIEAWADGDRVRMAFSDRAGSPWQDLDVVSWQLSSKEAEASPLREAFLRLADHVACHDRRLRRVLAPRSPAPPA
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Institute for Fundamental Biomedical Research
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