NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210394_10006275

Scaffold Ga0210394_10006275


Overview

Basic Information
Taxon OID3300021420 Open in IMG/M
Scaffold IDGa0210394_10006275 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12924
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (68.42%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020936Metagenome / Metatranscriptome221Y
F042487Metagenome / Metatranscriptome158N
F051357Metagenome / Metatranscriptome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0210394_1000627510F042487AGAAGGMNKWSYVAVSAALAVAGVGASVSAEAHPYLTVGVDVSAVVVVGPFGHAPVYCGPYCYEHGRYWRRDYDRYRFDRFPRDRWYRR
Ga0210394_1000627517F020936GGAGGMIEPTIRFPVACPKCGREQLTEFPLNEVVDALDRGSDISLVATCHDMIWTATELELEQIHQYLVVARGKLGQAKCKKPEDQIDSPVR
Ga0210394_100062758F051357AGGAGMRISVPIFAAAVMLAALSFGARADTSTDGRPTRISGRSAVYYGDLNLYAEKDAKIMLQRIERAAKKACGGHATVSSYTGSLDRYTFEECRGEAIQRAVNQLGAPLVTRIYSEARPRES
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