NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210394_10235827

Scaffold Ga0210394_10235827


Overview

Basic Information
Taxon OID3300021420 Open in IMG/M
Scaffold IDGa0210394_10235827 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1600
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylomagnum → Methylomagnum ishizawai(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004554Metagenome / Metatranscriptome433Y
F051310Metagenome / Metatranscriptome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0210394_102358271F051310GGAGGMKLLRHLLVLMIFSCCFAQCAMGQQTWRVKIDAKELDRGLLMQKLNEHGADHHIKFEFVNQNFDYRIAYGTGQAGGFGPYGPAVATASVTKVFDAKGAELFEFNRDGRKTDEGAANATAKEIIKRLQKLRSAG
Ga0210394_102358272F004554GGAGGMQYVIVGILNSYRDAEAAVEDLELAGIVGQQVEVISDIDQDARTANTPGEASTKPHEPHRNWIGRLFGAGGLLEKREARDLSGEQPNYIGEQEFYANHIKRGGAVIIVRTSAEQPADRAAAILRDHGARTPGQKDGPTIRRIE
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