NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213866_10000362

Scaffold Ga0213866_10000362


Overview

Basic Information
Taxon OID3300021425 Open in IMG/M
Scaffold IDGa0213866_10000362 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO284
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)37498
Total Scaffold Genes52 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (46.15%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024929Metagenome204N
F027500Metagenome194N
F031876Metagenome / Metatranscriptome181N
F046078Metagenome152N
F070680Metagenome123N
F079993Metagenome115N

Sequences

Protein IDFamilyRBSSequence
Ga0213866_1000036225F027500N/AMDWTSIDIGTLMGVTHWKGQARQETLLVKPRGNKGAYYYGDKVVRSKCSAILHIIARSEFIVMERGMGARANVVNAQAKLRGYIEGLCDFNKVQAREILPSEWRRPIKEHLGVSWPKKSEDQKALAQQVVKQLYNLDVSEDEADSICIGWSAMRLGYINSNQ
Ga0213866_1000036228F024929N/AMKPVITKISLINDDTESPYLNNPIFSCIEVGPDDEAAGSFLRIKLTNETGERLQPGEITLDWNEWDSLIKIVEQHRSQWDWE
Ga0213866_1000036245F031876N/AMSEDQRYCTVPVAEYDNINMEQVAATYGREVVLNPPIVANGTERLIGFCGNKPTTLYGYTTYTDTQWQAEVSNPESAYYIDPDIL
Ga0213866_1000036246F070680N/AMEIDANVVFAGIGACAVVGGAIMAYGELKTKVVGLMQRADSAQKAREKLFDKVSVVEEETKVQRVQIDDIRQNNNKLFELVEGQSRTLGEIKQELAVIISKLKSHG
Ga0213866_1000036248F079993N/AMKKKLLCLTLFAFTGCSTLNNAINTLPGYEFEQFDYSRTGNITSTSLSASNAKIENNMLIVEKAHVTHSNPLFGVNISVQGLKRPAAASTTGGVAPHGND
Ga0213866_100003625F046078AGCAGMTTWFRTLHVFWCGIEFGVRKSDMDALANGTMWDTAYLEVRAVCEHRPKLHYWTKMVLGCEKHYLNLGIFAVCWGSDIVEV
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