NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213866_10000703

Scaffold Ga0213866_10000703


Overview

Basic Information
Taxon OID3300021425 Open in IMG/M
Scaffold IDGa0213866_10000703 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO284
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26063
Total Scaffold Genes64 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)38 (59.38%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011300Metagenome / Metatranscriptome292Y
F053258Metagenome / Metatranscriptome141N

Sequences

Protein IDFamilyRBSSequence
Ga0213866_1000070317F053258N/AMKLTNEQTELLIDAVWKRQHHFIAGDRRYKEYGELLEILEGTLPYKYVRDEFK
Ga0213866_1000070325F011300N/AMLLLAIMMLGMWILISSLGNNDVDDDDDFGGGMMVPAYNPTN

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