NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213866_10001364

Scaffold Ga0213866_10001364


Overview

Basic Information
Taxon OID3300021425 Open in IMG/M
Scaffold IDGa0213866_10001364 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO284
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18123
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (55.56%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008084Metagenome / Metatranscriptome339Y
F028043Metagenome / Metatranscriptome193N
F069324Metagenome / Metatranscriptome124N

Sequences

Protein IDFamilyRBSSequence
Ga0213866_1000136421F069324GGAMISDEDFKFLLYESRNSYKILEIGTGTGKSTAALVANRATVYTIDRNNIFTHFGLDHNVHRFICESQTYWQEHNHKDFDFVFVDASIGSGDCQEILKRTKNTFNIVFHDYIPNETNKNKNKGGFNLKHFISAALENYDIKTRTGGTHCILAELRKDK
Ga0213866_1000136426F028043N/AMKNVLTQYLYVFVITVVFLFLFTWANSCEVEEIKVDEKAPVCEELQESTEENPCKKPENINSVIKAIEKLGESGTLPR
Ga0213866_100013643F008084AGGAMNTVVQKIGKWHSKVFGYVSNKAKTSKWWAIALTALVIYEVIEHVVYPILVPYLVYMNWFAN
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