NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213866_10001801

Scaffold Ga0213866_10001801


Overview

Basic Information
Taxon OID3300021425 Open in IMG/M
Scaffold IDGa0213866_10001801 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO284
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15689
Total Scaffold Genes49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (51.02%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000345Metagenome / Metatranscriptome1253Y
F004255Metagenome / Metatranscriptome446Y
F007569Metagenome / Metatranscriptome348Y
F029416Metagenome / Metatranscriptome188Y

Sequences

Protein IDFamilyRBSSequence
Ga0213866_1000180117F000345GGAMTEKQPNEFGKALQEWWDSDACKQLQKENEEAKQRAIGKYFMLSEEDKLDMVEAICHIMCKAESEGTSHRGVMDALGIYPAGFWIDNLMDVHNSLWSYYHNRKREQELKDDLDSLDEFIK
Ga0213866_1000180148F029416GAGMADTLSKRVYRQLFTEDQWDLIYNFIGNALDDDLFNPEDVYAIRNKIHALFDNND
Ga0213866_100018015F004255N/AMTEKSKIFYDIWKCAYQRRGLYRGTPREQREHDTILMCLNMKDVKFYQFDTEKPKYLNE
Ga0213866_100018017F007569GGAGMNFTPQQYKLIYTAVRRHQIEKTFTNSPEYQECSEILDELFDTVYTQRVEQPT
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