NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213866_10002607

Scaffold Ga0213866_10002607


Overview

Basic Information
Taxon OID3300021425 Open in IMG/M
Scaffold IDGa0213866_10002607 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO284
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12567
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (82.61%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025294Metagenome / Metatranscriptome202Y
F035273Metagenome172Y
F052627Metagenome / Metatranscriptome142Y

Sequences

Protein IDFamilyRBSSequence
Ga0213866_1000260710F035273AGGAMIKQPYKVWDRQNQSMTQYTPKKLYKIVVEYPVTNRTLEFIGMDRGSCIMQAEVHKEVDDVMMMASEEEITLYNKEKI
Ga0213866_1000260718F025294AGGAGMEASNDTAVQPENNVESVTDTANPVATEQSVASETKSDNNPTPSVEIRDGKTYVNGIRQYSRDDVNKISANAKNEVQKQMLNELNVDSIDQVKKVVSTLQEVNPQEGSTLNVDSLRDAVKKREATVEELKQQVTSLKTDLLLKDHMSQLQNAMPSNWSAQQKESVIKLMKADNMLAVEGDTFAIRNGNDFLTVDGETPDYAKAVEIVGKDKLGLSFGKQGVDLQYGETTDTPAGTTSSKKVDDNKVAIDTDYRAAFMRIRQYQPGIKRSQITDAMVKKEMKRQAGN
Ga0213866_1000260721F052627GGTGGMSKRSDLITQITTNLSGQSNITISQELPFDSGGNPLYEKNPNVVYVDEQELNVEQLYRTLDQGDVNQTTTTINAYFTTDAKNQFNNIDTVVANLLIARNAITSVTESNSDYETEITDDVITYTFEYNFITV
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