NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213866_10006418

Scaffold Ga0213866_10006418


Overview

Basic Information
Taxon OID3300021425 Open in IMG/M
Scaffold IDGa0213866_10006418 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO284
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7523
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (75.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002399Metagenome / Metatranscriptome563Y
F004603Metagenome431Y
F013531Metagenome / Metatranscriptome270Y
F019114Metagenome231Y
F048285Metagenome148N
F097272Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0213866_1000641810F048285N/AMKINQEQLEKATAFILETNKYIYEQAEELAKQHLEGEDNKSFKSRVKRYEAESKETLMHFTDEVTAWAECEKNYPLMDFIEKFFRVKKGYKNELY
Ga0213866_1000641812F019114AGAAGGMKHLKGRMQEARDEFYRNKRNRGFMAFWWSDPLHYVLGLEVAIADASSKSINFEAIVKLLPNSMGSRSTVATVLEDFVARKYMCKKVGKDRRERVYTICPEAMKLMSAWFTKRDFSIKAV
Ga0213866_1000641817F097272GGAGGMDLTEFGLDNIEAAGSSGGGERVKPGRYNLEYAGSEMIEGRNGWKALKIHFDVEGEIIKVSHAFTMAHNNDKPVEIGRESLMKMLNAMGVSSMKNTDELLGKKVEGELVVGDKGYLEIADNFGNNWKQYGTTLAKENVDPKEVLPKEEIFPSDVDDEDDLPF
Ga0213866_1000641820F013531N/AEQPLLSFQDKDGNPREIFEKDLTDRTKPLVAEISKDLQAEQQLMEAYQLATKTVHHMESVRKNVANSLEKLEAELPPYKKPVKIEGVTKEVN
Ga0213866_100064185F002399GAGGVSIPKTRTHKSVIGQLRKKYGLKDNTPIHKVEQIMTPKDWQAFSEALTFPNGKPTQRGK
Ga0213866_100064188F004603AGGAMIFSININGSIIDWCYTINNQEKQYHQTWIPKLKDILIVTKDLNGLTVSEVKKTILEDIQPDIQMVRDNTNKKARARRGKNV
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