NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213866_10008033

Scaffold Ga0213866_10008033


Overview

Basic Information
Taxon OID3300021425 Open in IMG/M
Scaffold IDGa0213866_10008033 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO284
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6613
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (36.36%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013631Metagenome / Metatranscriptome269Y
F027828Metagenome / Metatranscriptome193Y
F053990Metagenome / Metatranscriptome140Y
F080050Metagenome / Metatranscriptome115N
F105024Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0213866_1000803310F080050N/AMIEQSYSFRGIFINKNYSTRLNYMAPTAQDAWDLCAKLNPTFLVQNWGFEGQVD
Ga0213866_1000803314F027828GGAGMKTMLDKVLMIEDILTEKQLLVLQDMLYVYKELQEEVHNYPEPNTLFTRTQFELFDLFGI
Ga0213866_100080332F013631N/AMITDVFHYATSRWDWIDCNVNEMWIQEIEFNDFYRYVAIAYNPRKDVSMVMSEPRCYADTLNWVRKFCGSFCILPEYC
Ga0213866_1000803320F053990AGGAGGMINTCTLHDDYENFAQKFLGIDYEDYVSLQLGLPDEDEIEIEYSVSI
Ga0213866_100080339F105024N/AMYKTETSWIDELIKWENAHPEYKPFKEDKDSQRQQNLKENY
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