NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213866_10014857

Scaffold Ga0213866_10014857


Overview

Basic Information
Taxon OID3300021425 Open in IMG/M
Scaffold IDGa0213866_10014857 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO284
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4705
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (88.24%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021020Metagenome / Metatranscriptome221Y
F034945Metagenome / Metatranscriptome173Y
F042350Metagenome / Metatranscriptome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0213866_1001485713F034945GGAMGDRANVGIRGTDRNTIFLYLHWGGADRHETVANAIAHAMSRDGDEAYFTRIFISRVIDRDWDKETGVGLSVNKLSAQGDGYSVPIYNYTTKKVEIHEELWDVAGGFTNHTDIEYSRDMYLAEFAVRGVGSYV
Ga0213866_1001485714F021020AGGAGMSNVINLRNTVMTNNYDLNIWDRRGYETEYQEEGWVINVYQYHYLGSPYGAGTFMEDYTITLTPEETRRLTLGWGPELGGDYCPDSDFFLDKDSFLEIYSDIPERVYNLLWALPEYEQSLDIDPSLSV
Ga0213866_100148578F042350AGAAGGMAGRESEYMRGYLRGVAAMMNLITSDKVKRLDKRNVLEYARGLVEAQKEETNVPR
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