NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213866_10028684

Scaffold Ga0213866_10028684


Overview

Basic Information
Taxon OID3300021425 Open in IMG/M
Scaffold IDGa0213866_10028684 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO284
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3255
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023856Metagenome / Metatranscriptome208Y
F026889Metagenome / Metatranscriptome196N
F056586Metagenome137N

Sequences

Protein IDFamilyRBSSequence
Ga0213866_1002868412F023856AGGAGMRCKACDRILEESELTRKDTHGDFLDLCGICLSATASAGVDTETMQYYQYEIFTEDEKYDTLY
Ga0213866_100286843F026889GAGGMNNVIEEYLALVERTVYHSDLDAFDALEQLEEQYPELADLVYQQAGPLAYDIQNNEVTS
Ga0213866_100286845F056586GGAGMAAIKHTYQVIMTKVYEVKVEAESREQAEEIFDNFGDWEELLRVHTLDIEPADYLTLREE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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