Scaffold Ga0213866_10046983

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0213866_10046983

Scaffold Ga0213866_10046983

Overview

Basic Information
Taxon OID	3300021425 Open in IMG/M
Scaffold ID	Ga0213866_10046983 Open in IMG/M
Source Dataset Name	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO284
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2462
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location Name	USA: North Carolina
Coordinates	Lat. (^o)	34.7181	Long. (^o)	-76.6707	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F040053	Metagenome / Metatranscriptome	162	N
F048233	Metagenome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213866_100469832	F048233	AGGAG	MADVSAKVKEINLKLKPKELSMIIDSLYRDLDDMTTGNDDFSQVTLNIEGKLPFYKVEKHSDPHVRKWFITYTRLARQLDRMYVKVRKLEGAL
Ga0213866_100469833	F040053	GGAG	MKAYLIDTKYELITEVDVKDYYHKLELLNCRMLEVYPYNLNGNDIWVDEEGNLKESNYFAELDVDNEGIANYVISGNALVLSCDDEGNSTDVKNLTIEELKSRIKFHGRRFIEHNGHGFTTRAWEDA

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