NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213866_10127691

Scaffold Ga0213866_10127691


Overview

Basic Information
Taxon OID3300021425 Open in IMG/M
Scaffold IDGa0213866_10127691 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO284
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1364
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002858Metagenome / Metatranscriptome525Y
F023856Metagenome / Metatranscriptome208Y
F024320Metagenome / Metatranscriptome206Y

Sequences

Protein IDFamilyRBSSequence
Ga0213866_101276912F024320AGGGGGMTFEEYEQGYYEGDSEDNSGPSEDPETHAMVEHLVEFETEMYRLDCRRRLKGLSYRHLETMLVELHGREWRDAL
Ga0213866_101276913F023856GGAGGMRCRACDRILEESELTKKDAHGNFLDLCGICLSATASAGVDTETMQYYQYEIFTEDKDYDTLF
Ga0213866_101276914F002858AGGAGMLIDEKSIYEVTGGDYSVYCLGYTQARAVTNDIMKRDPWGGIPFVIRKDLELSLDNRGNVVMTKSTLDKVLDLASDELPEGDD
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