NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210384_10001972

Scaffold Ga0210384_10001972


Overview

Basic Information
Taxon OID3300021432 Open in IMG/M
Scaffold IDGa0210384_10001972 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26196
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (82.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F065185Metagenome128Y
F085609Metagenome111Y
F103138Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0210384_1000197214F103138GAGMKGTILLNYSDNTKQVEDEEKMRFLRGLLEQMGVPIQEIWATDEPLSIDQRIKLRGILATYSVQVIDDLDGHMQIYVEGEKVAEWFKCTYKLKRDLRQIDPRKQLYLEMEVNCWSLFEEEEQIQQET
Ga0210384_1000197221F085609GAGGMQSRVVAEAVRIEYEEKSGKFYIVFEVKDEKYKQDIKKNWTKDIEYRLVDRQLVQDTNE
Ga0210384_100019728F065185N/AMKIEFPDKSFIECSKSDNPGKVVITISAKDHESPLKKITNAVEITFEEFKKLISDVQIQ
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