NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210384_10004363

Scaffold Ga0210384_10004363


Overview

Basic Information
Taxon OID3300021432 Open in IMG/M
Scaffold IDGa0210384_10004363 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15834
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (61.11%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000512Metagenome / Metatranscriptome1064Y
F000885Metagenome / Metatranscriptome849Y
F002750Metagenome / Metatranscriptome533Y

Sequences

Protein IDFamilyRBSSequence
Ga0210384_1000436310F000885GGAGGMANAKTIFIGEMTQLAGVAAIVAGIVLSLHHWPAAVALLGGGCAYLVGKKLRAQ
Ga0210384_1000436313F002750N/AMFQLVKTLLRSRYVRLLEEEVARLRAENRALMNSLLGTAGFPPVDFPEAPKPQSLPRLRKRSWHQIQAWKEAEAGSNEAAK
Ga0210384_1000436318F000512N/AVPLCLCGIPLISIIRETHDTPEAVAWRLARAGGCNRFGEANYRAVWGWSRLAWIGGKFEERDEHGALLRERIELRKEPKYPAVNRWHIERWVPSEVYGSPRAWYAQTVEIADGRSIPALGPYPSRGEYEHCFTLESPRGEFVQLTPTIGEHIARAIEWSRCVPRSMRKRRIDDRELRKEQSYEVWAYDLLDDAAPAFHKQPFVTVA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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