NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210384_10010378

Scaffold Ga0210384_10010378


Overview

Basic Information
Taxon OID3300021432 Open in IMG/M
Scaffold IDGa0210384_10010378 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9517
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (35.71%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017210Metagenome / Metatranscriptome242Y
F055968Metagenome / Metatranscriptome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0210384_1001037814F017210AGGVNLCGKTREQIESALASKARSELLDIIFSLTTVEQLLKPAEIATLSRINKRAVLRDIRDGKFGPYFVRAENSIAVPASGVNKWRRGFLVRENGEQSTR
Ga0210384_100103783F055968N/AMKNSELNRRSNTSGQGLVIVIILLAIIAGGAWWLFNNKQTMDREARAFGREMIQRLTVNHDAAFLANHLSPQAKVDNPPSKQQYIISKLQELGVPAQPIQIDESITWESHFFEPRGFFTAHLIYPAQTATLQIAVSHPVSKWQLDDITMTWNQPR
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