NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210384_10053056

Scaffold Ga0210384_10053056


Overview

Basic Information
Taxon OID3300021432 Open in IMG/M
Scaffold IDGa0210384_10053056 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3675
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010343Metagenome / Metatranscriptome305Y
F026083Metagenome / Metatranscriptome199Y

Sequences

Protein IDFamilyRBSSequence
Ga0210384_100530562F026083N/AMVFETVYHPGLQLELRQKQEVWDTLGAFFVWMMVDGQLAGESYGIPLASSSELIEDLLGLPASEKERAVCCFSNTILPAFQKQGYGSILKAHWLGLAAGKGFDVVYGHARPGGSQALNAKFGAVFLENLPDWFGSGEDYRQYRLVLNAKIPS
Ga0210384_100530564F010343AGGMRRKLVWIDRKSFQGYGCSECAWVFKPSGNPAGESLDEMKRNYERERDKHFADHVCAERSGGRKTTD
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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