NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0210384_10297479

Scaffold Ga0210384_10297479


Overview

Basic Information
Taxon OID3300021432 Open in IMG/M
Scaffold IDGa0210384_10297479 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1453
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048906Metagenome147Y
F079681Metagenome / Metatranscriptome115N

Sequences

Protein IDFamilyRBSSequence
Ga0210384_102974791F048906AGTAGMRPSGQRRDPGAALLAGLVCGALWILFVTTILDVVRPGAPTLPALAVGVVLGLAVAAFCWRPGTSREIWGCVALTVGLHALAMPVVAAISFGATGIWPPPETADLGLSVDVLGVRLVGTPTTVRLGVGGFVGGLLLVAIGDRALGRRGIPDRLRRPGRLSR
Ga0210384_102974792F079681N/AMLPHPMLTPPNRRPKGRSERARRPVEVALRSLLVALCLSLHSPGVGAESERSTFHLATEFHGPLGYTNPDAVLNLRNGIANMVAFWPPADVGMRNFVVTHDVRLNFRLQAAAHVNHDSAGSIEAQRLAAARICAAQPAKSHLWNLMIEWDQGGGAWVPKGRPQYGALTRAQAHARFVDYYLTQSPPLATYLRQPSTERPCRLAAVTDYSPNAFDAYELGVDVGLLE
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.