NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0210391_10000002

Scaffold Ga0210391_10000002


Overview

Basic Information
Taxon OID3300021433 Open in IMG/M
Scaffold IDGa0210391_10000002 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)624183
Total Scaffold Genes548 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)429 (78.28%)
Novel Protein Genes10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Associated Families10

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000188Metagenome / Metatranscriptome1692Y
F000512Metagenome / Metatranscriptome1064Y
F000696Metagenome / Metatranscriptome931Y
F000781Metagenome / Metatranscriptome895Y
F002750Metagenome / Metatranscriptome533Y
F006125Metagenome / Metatranscriptome381Y
F006229Metagenome / Metatranscriptome378Y
F013331Metagenome / Metatranscriptome272Y
F071499Metagenome / Metatranscriptome122Y
F090675Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0210391_10000002260F000781N/AMLTVAQIAPLKDRDPYLYETLTKIVAAVNATSQSAGVDSSTPSPAPSPIASVTVQAANGWFDISITDPSASRPGLFYFAESDTAPSFNTPRVYFMGATRNLYTQLGNQTLYWRAYSQYIGSTPSAPISFGSPPTAVVGGGTTGPTPLPSTGSGTLPNGLLRGGNGFGINTGARITRPTVL
Ga0210391_10000002265F006229AGGMPSATATETAVLVNISPEQWPPRHRTYFGSLVIRSPQPGESFALTPVRSCVSIMDLGDKRTHPISITAHEIAEDLARELNSDSGEGSFHGVFVAAGDTPTTAELDDARNRLDNFHRRLVDAADLEWERTKNPMFITDLERRAARLLGLDKPWLYNSKPMDDCPVCAEKIKPGVAVCKSCGAILDPAKAAQYGFTTADRPIVHAKKKQENHEAGK
Ga0210391_10000002269F006125GGAGGMSIQITLLPQNEDGSGSNLYYAIGTLTFSGNYVVGGDTIDFTTIADKLPSAQIIQAFADSQNGGSGYYVPVAGTALNNWKLKAFTGGGTELTAEAYSTTFVATDVVQLTITARKLQ
Ga0210391_10000002270F000696GAGGMPVVGSSAYNTAGQITSLVRSLLNDAAGNLFTDTVLLPYANSAYRKLQRAIGNAGGGGFIQDDALLVVTAVTETDTSLQVSITDATAPPNQLPTDLLVPVKIWERPNLSTDDFVEMVDLSQHGGLPSRVQDVTLSVWEWRADGIYFLGATQDTQVRLRYAKAYPDFTDSTSPVLVRNSQEAIAYATAALAGWARGSPLAEKWDDAAADAIEDLVNAAVRREQQTQRRRRPFSSRSGYTPF
Ga0210391_10000002272F000512N/AMSHNRRGTACRALVAGPRVEVLRETHETPALVAQRLTQAGGTNRYGEANYRAVWGWNRLTWIGGKFEDRDDHGDLLREVVELRREPKYPAVNRWHIERWMPPETYGSPRQWYAQTVERENGVSIPALGPYPYRGEYEHCFMLQDPRGEFVQLTPAAAEHIAYAIQWSRKAPRAAGKCSITDRLSREERNYDQYAYDVLDDSVPAFHHQPFVTVV
Ga0210391_10000002277F002750AGGAGMKEFLQRVLNSGYVGLLEGELTRLRAENRALTNSLLGTAGFPPVEFPQEAPNPVPLSRVRRRSWPQMQARRESDAAHSVEAAASLNR
Ga0210391_10000002287F000188N/AMGVKPELAFDVCWKVYRSAREVLETKRGISALNLKDTGKFLWKPDIRPRLNEWVADFALAGEKALAGSDFASRMVLFRMFYLGMAPYERARQFLGLSEMGWVNWTEEIRRRVGKELLARGMFPPRKYFQTAA
Ga0210391_10000002320F013331N/AVRIRETDDLAGVAGVGEYFLISRKAGIENDFAAAARDRAGCTAVKYAPVFERKNGRSVLNFVQRVLLRGPYGTF
Ga0210391_10000002344F071499GGAGGMRLFRVLMIASLLITAVPRPADARVGAKSLQGLFSADECEVVPELLGSWSVPGVTYSVQKGDHNNYWMIDRDADAKTGNKLVLDICAAHISGQLFYDATFQILSPSGEPTLPPDFVVGSGIFAVDILSGFWTPMHIIGRLEIEKNALHFRNIDDQWLQGALKSRLINVTSAQDNSGEYFLTANSKQLKVFVASLSNIPKAFSKQQNLTRGPEPTPKSTP
Ga0210391_10000002436F090675GGAGGMFDSLLPAESEPISVASSRWLWAARCFALIYAISLVGEYVAAAHFDPLSSLVGFLVAFGPRILLGLVLLYFLFRSGKKSLAFALGLGAATAFIALFGVASNALFWPLGRSFNLFLVLIIFGPNTPPFVDMMHQPSPQLATEGLLLFWSFGICSAVLGISSVVTFRKMAHEAKGMGELRLAFRAGICCPLVVWLIFMLLIFIWLAANGGIHI
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.