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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300021433 Open in IMG/M |
| Scaffold ID | Ga0210391_10000069 Open in IMG/M |
| Source Dataset Name | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 118682 |
| Total Scaffold Genes | 104 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 82 (78.85%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Massachusetts | |||||||
| Coordinates | Lat. (o) | 42.481016 | Long. (o) | -72.178343 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000626 | Metagenome / Metatranscriptome | 976 | Y |
| F001727 | Metagenome / Metatranscriptome | 645 | Y |
| F004921 | Metagenome | 418 | Y |
| F005371 | Metagenome / Metatranscriptome | 403 | Y |
| F006427 | Metagenome / Metatranscriptome | 373 | Y |
| F081590 | Metagenome / Metatranscriptome | 114 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0210391_1000006921 | F001727 | AGG | MDGGARPPHRSFRLSPVDRLGRRISPSVLDAAEEVGRRAIEHAEREHIDPAVAATLLEEAAATVSRALDAKRHRTQNAVRDLPSYLFLAFIRRVNRTKKRQLLLEDAVRVRSAGSHNSTDPEAELELKILVDELLTRCDPVTRDMFYRRIQGFSWKEIGLYYSISGHAAESRFNQALHKVGVRLGLRSKL |
| Ga0210391_1000006922 | F006427 | N/A | MRMRIKDRAALEKKNKELLDFARSYLSEAFPNPDRQGCPPDAALRSLAFYPNESEPTVTEHLAVCSPCFRRYAELLAESKSQTEAQRGTSWRRVSGWTRAHPVLAGTAALCILLIAIGVGLLLQGIRQPNTPPIDTHRKPNPTEPLNPTVAYSPFNLDLSALSPVRGSESATGTQLRVPVPSSPLELTLTLPLASAEGRYDLRLTGGSETVWSKSAQAHLLKGKTLIQVEADFRQIPPRNYNLEVRSSSGIRLVQPLSIQAASPKSGEQKP |
| Ga0210391_1000006939 | F000626 | AGGAG | MPIVKKAPGIMTREVKLEEPVNELLEDYARFIESNADHVINAVLKKVLWRDQDYRKWREARRTAQSGTDKAQPTEARGRA |
| Ga0210391_1000006950 | F004921 | AGGA | MSKKKSKRVMVDAIPIKPVSAAEHRRLDRRIKKKYEKVRKRYREVHGKRVDWISHWVEEGILFLTVRFTDGKCFSITYSPCAILDSVDFSDMSTGDEVILKQYYQRPNL |
| Ga0210391_1000006964 | F005371 | GGA | MELLAKFRIGALLMAATASSALFAQNKGSDKPQNPSNIPDARQIVGQSIVAAEHSWQARNEYVYIERDEDRRLDSAGKVQSQNVDVTRMTLINGIRFEQLMEHNGQVPSAEDQKKSGLDAEKLKHETPEEKAVRLQKDQENRSFLHVLLEAFDFRLVGEETLAGRPTYVLEATPHPGYRASGKYAKLLSRVEGKLWVDQQDFGWVKVDGEVTQSFSMGLFVARVQRGSHIILEQTCLGDAVWAPKRLEVRASAKILFLKSLELDRILTYSDYRAAADGAFSVKK |
| Ga0210391_1000006977 | F081590 | GGCGG | MNKKTLLFFSLLCFCLQLPVSALAQCKDHLCQNLQNLLFAAVTDFREFRTNASPGPDLSVAGTRIPCQMTAWANNVPMYICYAQISYMSAETWYANMVESVRILQPTWHLKIDSPVADHFVDAGPPDCEVPATEGPYLGHCPLHLQITKQTDGTAKVYLWMSSLSSPYLVNRPPGPPLKAAPAPIAGGCDDFCQGLKKVFEARTSAFEQLRAAKATGGVSDATIKLGGAAECDVNVTPKLHSSELGAQYVCYWLEASAPAADTRFRDLVARLQVLEPSNWSIREDDQSEELAGAKVKAWCAVAPDAKQEMCVYLSGESVGMHIKSWN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |