NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210391_10017010

Scaffold Ga0210391_10017010


Overview

Basic Information
Taxon OID3300021433 Open in IMG/M
Scaffold IDGa0210391_10017010 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5869
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000838Metagenome / Metatranscriptome866Y
F012141Metagenome / Metatranscriptome283Y

Sequences

Protein IDFamilyRBSSequence
Ga0210391_100170102F012141GGAGMSGERYWIWVVVRLAVGVVIVGWAASYLLTGSGEKEFQKTLEAMKQVHSFRASETATVGTRHKEMLWEVDCPRDVYHYQWHETDSATGMDMSRDEVHYATDAYARGNDGSWSKPRYAHEHPPAWFCGALAQGNDNTLMPRISTMIQRGILQKGDKKTVNSVRCQEWQVTMKGAPSGLEHDTVCLGLEDHLPYELTVDWLQLRSSFSDYNAPITFDVPDAVTQQTSAVTGSN
Ga0210391_100170106F000838GGAMRVGSRIVFAICGLVSLLTGAPYVMLRGVDMPVQSEWVVFAAALALVGVFSVTLAVLPRSWIAKACHKDRDDPQLFSAPLKLLGTFAAASYLLAVIAYLAPRRWNLDPQFMLVLCPMYLIKMMFDPALVVVFFLLAPMNAAVYGSLGLALGFAWWVLQGRRST
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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