NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213920_1000388

Scaffold Ga0213920_1000388


Overview

Basic Information
Taxon OID3300021438 Open in IMG/M
Scaffold IDGa0213920_1000388 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)37192
Total Scaffold Genes61 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)57 (93.44%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9255Long. (o)-83.5226Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002540Metagenome / Metatranscriptome550Y
F022866Metagenome212Y
F047642Metagenome149Y
F053254Metagenome / Metatranscriptome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0213920_100038813F053254AGGAGMAADSQGNAFVFAGATYTAQSVNVTPGGDLLDTSHVGLASGANRTYQAPALKDNEISVEALGTAIVQIGTSGSLSFATVSYTATVSSSSVAYAVGELVKQSLTFKVQ
Ga0213920_100038830F022866AGGAGGMTRRCNAALQSLVLVRIGQELGCDSAAARAVHDLLELLANVAGVLAR
Ga0213920_100038831F047642AGGAGMIVNNTSPHENEYLAAVAGLGEQTPSPAKRVTYAIGDFVSGMSGGKRWSGRIWNVEGDRLSIEIDGGWIAVSARDVTH
Ga0213920_100038853F002540AGGAGGMPSYEATPAELEKYGGNLSIWDQIRLLQTWAPLVGFAQRFAQTLDPYAKAVIVSEAAEWVASKTDAQVDDQLVKLLGDLLKTKEGEALVRWCLLQVEAAR
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