 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300021438 Open in IMG/M |
| Scaffold ID | Ga0213920_1000397 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17 MG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 36301 |
| Total Scaffold Genes | 61 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 49 (80.33%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 33.9255 | Long. (o) | -83.5226 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000934 | Metagenome / Metatranscriptome | 828 | Y |
| F001991 | Metagenome / Metatranscriptome | 607 | Y |
| F054870 | Metagenome / Metatranscriptome | 139 | N |
| F058557 | Metagenome / Metatranscriptome | 135 | Y |
| F063689 | Metagenome | 129 | Y |
| F073551 | Metagenome | 120 | Y |
| F086839 | Metagenome / Metatranscriptome | 110 | N |
| F104778 | Metagenome | 100 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0213920_100039714 | F086839 | AGG | MEAKFEVSGLKETLDVFNQLQEQIGDKQAKSKILIPAVREAMKPVLALAKAMSPKDTGLLESSLYITARRPTKKDMGSRYISPQDSVISLVSTRPIPRKVKQEFYSKYSGLKGKEYKQAKKQFYAEQGLIYDARAIANEFGTAKMASHPFMRSSLESQAQTVSTLLGQILNLKIESFKSKQKLTK |
| Ga0213920_100039718 | F000934 | AGTAG | MPLNTILSVAESIAIKDQKFVGQVISRNQRISTSEILSVQPFQFEMKPMNYLLLSQNKGLLSELRVADRLSEQLLNFTSTGWTNYINYQGDMSSAQIIACQYQTLSTGKTIVLGSLPSILSTQYIVKAGDYLQIGRYSYIATSDVLRGTGSTVNIPVHRSILTTVQTSDPVVIGQYGTNSFAQTGITFPVVLTQYPTYTLVPMTNDSFIAWNSSFIALELVLN |
| Ga0213920_100039724 | F001991 | GAGG | MAVFNKNSLSQISGFDNPIIAGELVYNQKTYWNLAMATDGVPVDLTGATISASIIRRSVTNLHDTRYGLTFDIADYTPTPTAIDLTIANRSDAEGLFTLVIDESAWSVISTDPQLDINATDCVGFSGRIKISFPASGTTPAQDNIIFLLFLVRSDGVVS |
| Ga0213920_100039727 | F073551 | N/A | LENSDTIDDYFNFLQNKTIKDMGADSYDGKNYLVILLSDGSIAYIYSDSSLYMSVEKHLI |
| Ga0213920_100039736 | F054870 | AGGA | MNKLLIALLISLPITSIGGEAPKLRYNWVEKEWHYAPSNAKLKYNWTNDKYEFVAPNSELKYNSQNDSFEYVQSSTDPYKSDIGDNNE |
| Ga0213920_100039745 | F104778 | GGA | METVKGYMIEEFDKNGNLVWKMFSFFEPDSIQWMKDIKGKSHNLVISKLGVIESKEINNIEKKYDSSKFVVGL |
| Ga0213920_100039747 | F063689 | GAG | MEVLFRYLVFDDVGDPIRRFRTKHEAECYVLHRPNHKIVRLPPPPKENVFDLIKDEPLF |
| Ga0213920_10003979 | F058557 | GGA | MAIKRYENVDVNTLTFGTDAYGEQTTTITKKFTGRPLVSSVKNSLQITGDTRIYQDLINFKFNFTPWMQDVIVNQNLYSFKWRNQDWRITNAIESDDKMSVTMLCYRSDPVTKV |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |