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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300021438 Open in IMG/M |
| Scaffold ID | Ga0213920_1000496 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17 MG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 30625 |
| Total Scaffold Genes | 54 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 23 (42.59%) |
| Novel Protein Genes | 10 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (40.00%) |
| Associated Families | 10 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 33.9255 | Long. (o) | -83.5226 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F014726 | Metagenome / Metatranscriptome | 260 | Y |
| F014837 | Metagenome / Metatranscriptome | 259 | Y |
| F016141 | Metagenome / Metatranscriptome | 249 | Y |
| F023295 | Metagenome / Metatranscriptome | 210 | Y |
| F024095 | Metagenome / Metatranscriptome | 207 | Y |
| F030057 | Metagenome / Metatranscriptome | 186 | Y |
| F035672 | Metagenome / Metatranscriptome | 171 | Y |
| F043831 | Metagenome / Metatranscriptome | 155 | Y |
| F048257 | Metagenome | 148 | N |
| F088525 | Metagenome / Metatranscriptome | 109 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0213920_100049613 | F043831 | N/A | MTSTQLAAIAYQLGVIDSIRSQLGEAAFDLNNINEIPLSVKLELAFRAFDERAEEHRKILNQFTDEIPIDPIRRG |
| Ga0213920_100049625 | F048257 | GGAGG | MTDFPSSVAARKCLRGEGCADSLYWLLRRTLLINGGLRLAGEKKDLWKKSFYAAAAVEGFVFAWTATHMDEPVASLPSGETAIGGNAFEILGTYLTRSAIVGAGLWAGGDRKHLVKNALISTAMIQAAVLMWAQEKQQS |
| Ga0213920_100049627 | F023295 | N/A | VKRLRQLSDKAKLLLISKRSLVLLSMLQSMGCQTRVILVPDGQPVMLAEPVKAKVYAFDSRGQLVPSSNRVLLPAGWYALPRK |
| Ga0213920_100049629 | F035672 | N/A | MNLHDSLRDLGIGVGGPAGGLFIANVVPDPVIANISVTLGSLAALTVIIKNILDILKNNK |
| Ga0213920_100049635 | F014837 | GAG | MIQRNINPKPRFVTLTSGPSTGALVGVPLATLWRAAFFQFPQDSIIHYVLVNSTLTVNGALAQAIGSIAYNQGDANIGESLNAGAPNFADNVIWRDELLNPAAGVLSEGKSTQIIMNEFFCHTGTGFGIYVNGINASVNINATIAFNPIAEWVNFREPTVGARI |
| Ga0213920_100049636 | F024095 | GGCGG | MDNTNSLPFVYVVTATLGAAVGATSSTTLIMQADSRFELMGIFGTGGENVVTTEQNLQYPNSFTVSIRDQTTGRDLMSAPVPQRVLCGNAFKQFLEKRGIIFEPQSNLLFTFTNLTAATNNITLALHGYKIIL |
| Ga0213920_100049637 | F016141 | AGGA | MTPEIIDSLQKRFGSADFSRYQVVRGQKYDFCRLLAAGTNSVSFFSNPIGATDPGAGATLFKTLEQTNLVKNASFGQEYFALTQIRTYAGFVCQSRQGFTTGTNFTYRGYTALLNGAMEQLQSVMATGVLEISFAQKLYYQIARPFIQCPPGFGIDIQSLASSRTGNAAETQVTGTNWTARPDYRATSVYNIDPIQIIEPEIQIQAAINFPAGNTPNFTNTALDTANGTQTPAVELGLIFDGYVIRPSQ |
| Ga0213920_100049638 | F014726 | N/A | MGFQSESIISAASQKFGVIDYSRWQAIRWQWYSYVTYPSAGTTELNFFGQVAGQAGVTLQDTNLPKAGSFGQTHFQLKSISTDIQLANNDVDGFTRANQATIDTRALASDFIGGFVQAGVLRFSVGARPFATIVKPFQYAPPPGSPFDYDNTYVNQISAAPVPAAGAADVVGVPWVTQTKLRNNVYFVDPNILIEAEQQFNVSLQFPSGAVPVLATNVVNDSTNPLKVGVILDGLLLRPV |
| Ga0213920_100049640 | F088525 | N/A | MTLPIRQSELNKVGFTGYFPALSWNQRKQVAALTLNAVGRTQDAFLLEINNVNAVRGITYVADVPPLRAGR |
| Ga0213920_100049650 | F030057 | N/A | MAVTYKVAKALNGGLWKWIDGEEKVFTILGPIRAGRVVDNPRNGIAKAPDILNVRDAADGNEKEVLVGQVLKSTLVENYPDDAYIGKSFACTQSAPPAGKRYKSMTVNEVEIEETPKKAK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |