NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213920_1000911

Scaffold Ga0213920_1000911


Overview

Basic Information
Taxon OID3300021438 Open in IMG/M
Scaffold IDGa0213920_1000911 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18408
Total Scaffold Genes42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)34 (80.95%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9255Long. (o)-83.5226Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005737Metagenome391Y
F031035Metagenome183Y
F042803Metagenome157Y
F062385Metagenome / Metatranscriptome130Y
F071017Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0213920_100091111F071017N/AMNTDTSPTPSLIDTKTVKNLALLPSEDRLKLQETLRQTEARYWIKRFKKMAKEEGQSEALAWWQKTLSDLVKKRGQPAVDELRQRMNDEIRR
Ga0213920_100091116F005737AGGAMFDIETYKKPTDWAQVALYLVSIAAIVVVALDVFIWRASC
Ga0213920_100091117F042803GGAGGMLNDGDNGEFTTYLIWDEVHVEWTWCEGDDWDTDGFFDIFVTKDGIDITYDLPKMHFKWIEQEVKELAGYEPPSRQRVAQAINGYLNKTF
Ga0213920_100091131F062385AGGAMGYEAKKIPNATSSDMTGQKKVGVSKVDREYGGVPSTTGATPPKGATSSDTSGERKAPIRGGVGMGKADGMGMREASHMGMHDGRKGEMKGHMGEKVVYEHKRMAHEQDGM
Ga0213920_100091133F031035GAGMSKELIQLRIQDLMAKGRELEQQIHQINGALQQCQWMLAEMEKDDVKEVDQPQGV
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Institute for Fundamental Biomedical Research
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