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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300021438 Open in IMG/M |
| Scaffold ID | Ga0213920_1001123 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17 MG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 15966 |
| Total Scaffold Genes | 46 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 36 (78.26%) |
| Novel Protein Genes | 13 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 11 (84.62%) |
| Associated Families | 13 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 33.9255 | Long. (o) | -83.5226 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000447 | Metagenome / Metatranscriptome | 1128 | Y |
| F000684 | Metagenome / Metatranscriptome | 938 | Y |
| F002935 | Metagenome | 519 | Y |
| F005531 | Metagenome / Metatranscriptome | 397 | Y |
| F006744 | Metagenome / Metatranscriptome | 365 | Y |
| F012455 | Metagenome / Metatranscriptome | 280 | Y |
| F014142 | Metagenome / Metatranscriptome | 265 | Y |
| F017133 | Metagenome / Metatranscriptome | 242 | Y |
| F029434 | Metagenome / Metatranscriptome | 188 | Y |
| F034575 | Metagenome / Metatranscriptome | 174 | N |
| F053761 | Metagenome / Metatranscriptome | 140 | Y |
| F074868 | Metagenome / Metatranscriptome | 119 | Y |
| F079977 | Metagenome | 115 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0213920_100112310 | F074868 | AGGTGG | MTTLNKTNIGLALGISGALENRILHDWNNGGAKSTYGLSVWQRKALLKVLIGENPKCYCVNCLEVK |
| Ga0213920_100112311 | F017133 | GGAGG | MTNSIFGQGFASVSDYPRGLMNLCPCGQVVLAPALYHKGESYWENPNKCKELFEELNK |
| Ga0213920_100112313 | F029434 | N/A | MKKYTFGVWLDIDAENDDDALHFFDSVIKNNLVSDSYCFEWKEVE |
| Ga0213920_100112315 | F000447 | AGGTGG | MGYIEIFRLDEQGAGWVDLSEATPQELLDLEIGLFQEGAM |
| Ga0213920_100112320 | F000684 | N/A | MTLGGYTYQLGDLFTTSKTGVTGRIVKFSPLSNKVTRVQLRLANGQQRFAMVKTTK |
| Ga0213920_100112322 | F006744 | AGAAGG | MNLDEYKAHVIAQREASKAEAMSVLSATITTTKKEGSN |
| Ga0213920_100112327 | F079977 | AGGAGG | MDLFATLAEWYPDGDFTEQDLWEAIAEVNGVDVNEIMDRDLTEFI |
| Ga0213920_100112329 | F012455 | GAGG | MDKVKRIQELRRSNAATAIPSKKVYTRKQKHKNKFS |
| Ga0213920_100112337 | F053761 | GGAGG | MGARTNYTIITTENPEQNINVYAHWDGDSAVSNLQHAIKKAMPRIKMGDTSYAVRIIIDNLTMEGRDSETGYGIYIGSEITHEEQYEYKEINLLNNTVTIGNTTYNIDAWLLATV |
| Ga0213920_100112338 | F002935 | AGGA | MSNRIKGYIGNVLDGKKLAKIANDIYNLQYSSDFSECTVDNLLLIELEEKNVFGDPKYAVVCSEGVGWEQDTYGCLEIPTNIGQMGLWNGRVFISVDTVKSCMTDQTEDISEYIRTFGSRLDSNCSLWQSKMSVAPATISV |
| Ga0213920_100112343 | F034575 | GAG | MDTLTLDPYLMKQVEMGMDGADILHGHLKTLMYEAEQILDRCIEVEEESGEAMDSMERTNAEGYLDALAHIYSLTYAIAFAKAEVKNAVH |
| Ga0213920_10011237 | F014142 | AGG | MNTLNTLTVVVEPTHSMASSNTKSPSIFRTKDGNYISRMAYVYMVASEGLISHRYLTPNESRWVFNFKKESN |
| Ga0213920_10011238 | F005531 | AGGAG | MTITYTLWQGSTLLAVNQKASKPEDILAVIKELEKLGKGFTYNIREVDTK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |