NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213920_1001275

Scaffold Ga0213920_1001275


Overview

Basic Information
Taxon OID3300021438 Open in IMG/M
Scaffold IDGa0213920_1001275 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14316
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (17.24%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9255Long. (o)-83.5226Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027773Metagenome193Y
F037112Metagenome168Y
F038143Metagenome166N
F048832Metagenome147N

Sequences

Protein IDFamilyRBSSequence
Ga0213920_100127523F037112N/AMFTYRITLLLGKLDTSTCPPAVVSVIFPAFNGEPVTLTESEITVTFATEQTPTDLGPLVRVELI
Ga0213920_10012753F038143N/AMDDSVYTNPLDIIFPKRTLVLICGYARAGKDTLGDGILEWSEKNAEKVNFADELKDCANYLLDCLGLEGNFHNDDFKSKNRDFLVSLGTFARKMKPTVFAEIMAQNVAVGYDDEGMPLDTVVCTDWRYLNELIVCQKLLIPLGWRVRTIYISTKGVSAANTEEANSICEIRDVVRFDQEYHFDIQQRQLIMQEGRMLAKQWSL
Ga0213920_10012754F048832N/AMTTPSNDRPPLKTIDTSGVYVLRLCKPKPEKFKLNSAGFPAVSIFFMTAEGFCFNKNYSTQYGTKSVAMLVGKFTNKYVQSPEQMTLEDFTDCVNSAANCVAEVDLEVTPNGEWNGRPQYKYKFKSIKSILGNSNGQPTLNADAPVPDFTKPDAPF
Ga0213920_10012758F027773GGAMFDKEKMKEVPMVTLDELMAGITNHNKLMTLEARIKALEIAGDRLAFLMLNGTTTEMKKALWEWRELNPAKKDDGLDS
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