NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213920_1001840

Scaffold Ga0213920_1001840


Overview

Basic Information
Taxon OID3300021438 Open in IMG/M
Scaffold IDGa0213920_1001840 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10990
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (82.35%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9255Long. (o)-83.5226Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017969Metagenome237Y
F027776Metagenome193Y
F067676Metagenome125Y
F079788Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0213920_10018401F027776N/ALCTHSMVVCMMNPLEIEIKKTVFAHLPAVGDLGILSRGDLATVLHTACTEAALAGWARGAETTQKRVDAEMAILRQELKAAQTELAYAKAN
Ga0213920_10018402F079788GGAGMDTDDEIESWASLVLGLIAAVFFFIGLAAVIVAACMAFGYYTYAPKCGTVAAMFTQECKA
Ga0213920_10018403F017969AGGAMIQILYIPVLFVCMNGNCEFMQSLTYFTRESECRASVDAHKENLRRMSLKGGQMVTLIEGTCITLKNGML
Ga0213920_10018405F067676AGGAGMTKVEALNVIKLLSAMESWAFSQPDTRRLPDYLVEDIANAMRVLERIVLEKNNGT
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