NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213920_1001972

Scaffold Ga0213920_1001972


Overview

Basic Information
Taxon OID3300021438 Open in IMG/M
Scaffold IDGa0213920_1001972 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10418
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (93.55%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9255Long. (o)-83.5226Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000652Metagenome / Metatranscriptome959Y
F052344Metagenome / Metatranscriptome142Y
F071946Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0213920_100197216F000652GAGGMTGFNSKRQMANDKLKEQGMKKVIVRTELYQELEVPESWDRYDVYDFLAEHESFREAFQGVSNADQTARIVDLGITTETVTEMGEEAYDE
Ga0213920_100197228F071946AGGAGMYNIVENPIPKTGLFATPESLDQLMEYCQRFNGQERIIAITVATMALNLSHDLVEKNILSKEIFAQ
Ga0213920_10019726F052344N/AMFIQYEVWGSLDGHEQLIECVATLKEAEDLVEAEQSFVDEIWIIQDTDGELKEVRRYQGL
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