NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213920_1004537

Scaffold Ga0213920_1004537


Overview

Basic Information
Taxon OID3300021438 Open in IMG/M
Scaffold IDGa0213920_1004537 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5388
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9255Long. (o)-83.5226Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035651Metagenome171Y
F037608Metagenome / Metatranscriptome167Y
F068601Metagenome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0213920_100453711F037608AGGAGGMSNVISFHPPKSSLILLYEVVDEWGNAEWGGNSEREALAWIANSRTATRILVSGWESDDEDAHLVGQPIDITTIVREASR
Ga0213920_100453713F068601AGGAGMNESQENIVALSDIREEKLRALSPYGPVKAGLTTLPSQETRKGENEARLMELLNSLESVAESLQYKSFTAYDTLIIALEGVRVALSGGTPDTDGTEGML
Ga0213920_10045377F035651GGAGMGYYDGDPWSNHELNELKCAECGDYFDQQDKEGGNICPVCIDEGEGE
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