Scaffold Ga0213920_1004721

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0213920_1004721

Scaffold Ga0213920_1004721

Overview

Basic Information
Taxon OID	3300021438 Open in IMG/M
Scaffold ID	Ga0213920_1004721 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17 MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5219
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (7.14%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	33.9255	Long. (^o)	-83.5226	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F027773	Metagenome	193	Y
F048832	Metagenome	147	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213920_10047212	F048832	N/A	MTTPSNDRPPLKTIDTSGVYVLRLCKPKPEKFKMNSAGFPAVSIFFMTAEGLCFNKNYSTQYGTKSVAMLVGKFTNKYVQSPEQMTLEDFTDCINSAANCVAEVDLEVTPNGEWNGRPQYKYKLKSIKSILGNSNGQPTLNADAPVPDFTKPDAPL
Ga0213920_10047218	F027773	N/A	MKEVPMVTLDELVAGITNHNKLMTLEARIKALEIAGDRLAFLMLNGTTSEMKKALWEWRELNPKKDDE

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