NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213920_1006162

Scaffold Ga0213920_1006162


Overview

Basic Information
Taxon OID3300021438 Open in IMG/M
Scaffold IDGa0213920_1006162 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4233
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9255Long. (o)-83.5226Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003111Metagenome / Metatranscriptome506Y
F003784Metagenome468Y
F068601Metagenome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0213920_100616212F003111N/ARGIGEVPLHYVVVKRRNAGIDKAWVVQDLTQWLKEKQ
Ga0213920_10061623F068601GGAGGVRTKESHENIVALSDIREEKLRALSPYGPVKAGLTTLPSQGMEEGDQLLRLTELLNSLESVVDNLNFKSFTVYDTLVCAIEGVRVALSAGTPDTDGTDTL
Ga0213920_10061628F003784GGAMAADDTDFEYYGLSHLAGGRGKRDGIDMSKTNPLVDHLAVRGYRAGGVSTDDLTSFIESFASLRASRVRGVGHDQYSHAKGQKFESFTFSDTIRELIEELADASNYIDFLAIKMLNLQHLIDSELPNCD
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