Scaffold Ga0213920_1006600

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0213920_1006600

Scaffold Ga0213920_1006600

Overview

Basic Information
Taxon OID	3300021438 Open in IMG/M
Scaffold ID	Ga0213920_1006600 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17 MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3967
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	33.9255	Long. (^o)	-83.5226	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F032299	Metagenome / Metatranscriptome	180	Y
F078800	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213920_10066001	F078800	AGTAGG	MPKVVQEKFQVTFPEDYNSRAEDDHGWVTDMESRTKKGLHGREGKAGGDHASRFVNNAVFFNGLPPGSDIEDQEYADVRMMGINLAGNMPDQYAEGDLTNREVNRTSLVKGYDKKKLLQTDDVYTREHNDAFYDDVGGFVERNNYLDRS
Ga0213920_10066002	F032299	GGA	MPKVNQKERGQYETPQTTANQLSTPMFGGAAPTKEDVVRSANARGGARHEMKRSEVADIDVLPDSAEMLGNEMVGVRNNGYLVKKGLEFGVNAFYNTLGPGMDIEDQENSDIRQMDMVVYEGGLSFPGDGWTHRSLGSQMPRTKDMGRPAMTNKIGSAKS

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