NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213920_1007353

Scaffold Ga0213920_1007353


Overview

Basic Information
Taxon OID3300021438 Open in IMG/M
Scaffold IDGa0213920_1007353 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3650
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9255Long. (o)-83.5226Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002044Metagenome / Metatranscriptome599Y
F007522Metagenome / Metatranscriptome349Y
F048985Metagenome / Metatranscriptome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0213920_10073531F007522AGGMTLKEAGLWWVAIMVVITLAYGMYENAKQTHYWRGRKDGWDMHRRMIQNKTDADHN
Ga0213920_10073533F002044N/AMANTRKPSKRKKINRRIVRHSPEPLSKIDQHYMALHECYKAARKAGFTPEHAFWLMTEHKTFPDWVVGDGGIIPTIDPTDDEDDD
Ga0213920_10073537F048985AGGAMPNTSQVTVTTTATLLVTANRADQSVYLHSSSGVIYVGGAGVTTSTGYRMDNGDKLTMQLSDNESLYGIASSGTPTMMVMATIN
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