NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213920_1010210

Scaffold Ga0213920_1010210


Overview

Basic Information
Taxon OID3300021438 Open in IMG/M
Scaffold IDGa0213920_1010210 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2805
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9255Long. (o)-83.5226Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004666Metagenome / Metatranscriptome428Y
F021288Metagenome / Metatranscriptome219Y
F023344Metagenome / Metatranscriptome210Y
F038669Metagenome / Metatranscriptome165Y

Sequences

Protein IDFamilyRBSSequence
Ga0213920_10102102F023344AGGMKMFTDDMNQMLMDSIEHDIKEQLFEDWNNSNLDEGEEYAEFKFMEFAPDNVRQSYNEYYGYKEGDDYFLC
Ga0213920_10102103F021288GGAMLGYKYNDLINMLYGIQNADLIINSDENPAIHNYLVMASDFFAGLLAEGYFDHV
Ga0213920_10102105F038669GGAGGMVFDELSPHLQKLVDMGETGTDIMHGELKNWMYECETKLIEIGDSDNIADKFYFEGRMDALTDLYGMTYNLAFAINERAKQRGR
Ga0213920_10102107F004666GAGGMATKREYLQSKGITVGKRGRFSGAAKQALSEAEKNGVKFTAEVKTK
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