NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213920_1015022

Scaffold Ga0213920_1015022


Overview

Basic Information
Taxon OID3300021438 Open in IMG/M
Scaffold IDGa0213920_1015022 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2081
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9255Long. (o)-83.5226Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001059Metagenome / Metatranscriptome790Y
F006264Metagenome / Metatranscriptome377Y
F103134Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0213920_10150222F103134GAGGMYGRVIDGGKQMSKGLSKGINDKLAGFEEENERRATIATAVKNAFTVRHLSDQTTNNSNNGKFQTIKEKAKVNP
Ga0213920_10150224F001059AGGAMATYDIEALKADLPTAKDLAQFVYDKTQIALDLVGKSKDDQYQVAKNALEGKKVPAEFLTEENPYVDKKDLIPVDELKVIPPRSKDLPPEDTQVHYFGATNMPHPLDPQSDKKVAIDFRKYENGLITYQVVAPVEQIAVGSRINKYGQTVPEKYTWLDPRTEELIMRRPDGTFTERGRGLHTYLIGEKGGGVWSLIDRDMVSVSAKNIADPWA
Ga0213920_10150225F006264N/AMTEDFSALFKQRLAGQAEVCARKSLEWLQKDLQGEYKLLPSEVYYLASAANILLNIRDTYGKK
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