Scaffold Ga0213879_10001569

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0213879_10001569

Scaffold Ga0213879_10001569

Overview

Basic Information
Taxon OID	3300021439 Open in IMG/M
Scaffold ID	Ga0213879_10001569 Open in IMG/M
Source Dataset Name	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R03
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3689
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil → Plant-Associated Microbial Communities From Velloziaceae Species In Rupestrian Grasslands, The National Park Of Serra Do Cipo, Brazil

Source Dataset Sampling Location
Location Name	Brazil: Minas Gerais
Coordinates	Lat. (^o)	-19.28	Long. (^o)	-43.5919	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013471	Metagenome / Metatranscriptome	271	Y
F043580	Metagenome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213879_100015691	F043580	N/A	FENIGLPNQRTLLINRPTMAGPGKVVLKSSQDVLNVLRVRLDWARPGVVRLVDNIPNGALITTGGKMFAPEEVDGSPLTPIADSWEGRILTTSVTDQAERIDKGIDFAISIPDKLARARLEVLVNGLHLDQTLTLWLNGSVVGKLALEVPDLTDPGYEKAENGTMRFTGWRKGVFMLSGDQLPVGENHFQFQTPPGAQVAIRDFLLQIEYLPN
Ga0213879_100015694	F013471	GGA	MLALTIFCVVAVALTTALQQTVDASIMLRDESQVRLEIQNLLDETAATKLKPGKSEVQVGDGRVRYEREIRAVQAKTARGDLLPNLYEIKVQASWRSSGQDRSESAALIVYQP

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