NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206685_10001547

Scaffold Ga0206685_10001547


Overview

Basic Information
Taxon OID3300021442 Open in IMG/M
Scaffold IDGa0206685_10001547 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 200m 12015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6982
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (60.87%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.6907Long. (o)-122.3448Alt. (m)Depth (m)200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003082Metagenome / Metatranscriptome508Y
F011590Metagenome / Metatranscriptome289Y
F015479Metagenome254Y
F020715Metagenome222Y

Sequences

Protein IDFamilyRBSSequence
Ga0206685_1000154713F015479N/AMKILMIIATGAIFTFPMDKSIEADCFKQGYNILQKMSTYHDTGNKDQGWYLKGKPIQVAGWYCH
Ga0206685_1000154715F011590AGGMGYKETCNLCKGNGYITLIVKEKDEIKQCWLCESEGEYRYTQAEVDDFIYKMYYKK
Ga0206685_1000154719F020715AGGMTQPTKRKKRTNNPIARLLKHFTPKRFKDKTKYDRKRYGQIWKRYLWKGL
Ga0206685_1000154723F003082N/AILRARRSARKKRNKEIKWMKYLVSCIIIGLLFLFSVGCNGVKHIISIEEPTDHTSGDDGGKLKYKLIFGDVNQKE
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