NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182009_10003603

Scaffold Ga0182009_10003603


Overview

Basic Information
Taxon OID3300021445 Open in IMG/M
Scaffold IDGa0182009_10003603 Open in IMG/M
Source Dataset NameBulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4627
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Sorghum-Associated Microbial Communities From Plants Grown In Nebraska, Usa

Source Dataset Sampling Location
Location NameUSA: Nebraska
CoordinatesLat. (o)41.1613Long. (o)-96.6752Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000092Metagenome / Metatranscriptome2385Y
F046497Metagenome / Metatranscriptome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0182009_100036033F000092GAGVKQHLQRQSGVANVDVSLIDGRVQVTPKDDGRIDPAQLLKATYDSGVSVAELDMTASGKMAEESSGNFVLQVNPKQSFVVSPNELSKGLEPLVDSSTVVTVRGQLYKKPAGKQKKAYLAAPLKLLILEVLKKE
Ga0182009_100036035F046497GGAGGLRLRSPLRNHCGIWALLFLLNLLSVPIAKGQGAAPETAPPLFPGGGLISYSSNFNSRGVVSDSSGAIPATARPTFAHEAGFNFTWGFRPNLDLTILVPIITSHFEVLNATTVRGTGLGDAMALVKYRFYRRDSQRGTTQASVTVGPKIPTGQTNLRAANRIQLPATLQPGSGSTDFFIAANWTYTGLFNLRRLVADEDFHSLLRTEGTQRTRLGSDTESRFWLSYRPYESKNVAREWFIGPVLTWLHSGDDRIERVSQRGSGGDTLLAGATTYVGLRPGMHLWLGVDWDVAHSNGALFMPVRRHVSFGITQQFRLHR
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