NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210390_10000003

Scaffold Ga0210390_10000003


Overview

Basic Information
Taxon OID3300021474 Open in IMG/M
Scaffold IDGa0210390_10000003 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)868610
Total Scaffold Genes793 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)616 (77.68%)
Novel Protein Genes11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (63.64%)
Associated Families11

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000136Metagenome / Metatranscriptome1961Y
F000912Metagenome / Metatranscriptome839Y
F000954Metagenome / Metatranscriptome822Y
F001348Metagenome / Metatranscriptome717Y
F001632Metagenome / Metatranscriptome660Y
F001885Metagenome / Metatranscriptome622Y
F005753Metagenome / Metatranscriptome391Y
F006274Metagenome / Metatranscriptome377Y
F014644Metagenome / Metatranscriptome261Y
F017174Metagenome / Metatranscriptome242Y
F025334Metagenome / Metatranscriptome202Y

Sequences

Protein IDFamilyRBSSequence
Ga0210390_10000003280F000912GGAGMSLDAFVRCTCIRDGKAKPHPFPDRLTFDESGEPLLSGDPTEDEWEAHDQWLTHSCEHEGFILSMFLGNITRVGNLRSFLRALQGSPGPKFPILLKKVLYDGTHTGDWIPIKESPALLKEVDTVLHSSDILAESEKEFFNNMKQLCEASIATGNPIMF
Ga0210390_10000003304F001885GGAGMEAASLSTMRELSAIVSAKGYGRDLLYHSGDSQYVLLRYWNSEQARATAQEDPEVLRCWARLGNEIQILKIYEKLEEVGV
Ga0210390_10000003378F000136AGGAMAKAAKLKILYGEGDAEEQTAQATAFANAGHTVEKALGRKAVVEALKKGPFDLVVLGPSLTRNDRHHLPYMVKKASAETLVLVMHADGSRHPYVDACTDTGASIENVLARIEGLQIAGLTIAAAAGR
Ga0210390_10000003391F005753N/AMLHRVDFILLLSVAALLVPAAWAQQQPASSISASSAQHVQKPTATAPSRDAGSVVNGVYRNPSFGFTCKIPPAWVLRTDEMNAPDDEATTTHTAKSATNSATNTDTAHAGRVLLAAFSRPPEARGEDVNSSILIAAESVAAYPGLKDAAQYFGPVTEVAKAQGFEIDGEPYEFAVGTKTMVRADFQKNVGTRVMRQSTLVILVRGYAVSFTFIGGTEDEVEELIGGLTFTAAPKLPSH
Ga0210390_10000003442F001348GGAVTDVGKVLGSVAVQLMNGEVVVLEDQKIPVKRVGSGRLRMVQFKSNGRMLEAIEQNREKPSRWGQLAREKHQVVQFRDLETHRYVAVSVDGEVQEYGK
Ga0210390_10000003522F006274N/AVNPHRQNDSSRQGAHKRHAIYATETSGLLFVALLLLVLILVRYWHAIHWSVR
Ga0210390_10000003606F001632AGGAGMFPSHWKWVMTFVLFASRFALAGDTNDQLAYCAYLTQQAEAQRDLLRTPIAFGGLTQPETGLPVQIVGGASLGLSNFRKAGLAIDVARKNCELYKATTSAQQNVQYALASLEREALSHRLVLIDDASKTLNDLLDQTAKMVDAQNATRLMLFTLQTTKIKIEADRADTQSKIAALYIPPLTDQALKDLLADKENRETNEQKALDKLARQSDWDVALSVGVHQQVNPVAYGAQPYGTVSINYNLASHSINKHLDRTVEAYHEWKKVQEGDIVRNAEVLHQQLLDNAAAQESRLKSLQAESAEMDQNLQLVANPDTSTALDFRNQLTSARLLLQIETGDASFRLDRLREYLARNY
Ga0210390_10000003631F014644N/AMDKKQINSPKMTLNFLIWVGGVFMLLFMFLAHFVWRIF
Ga0210390_10000003660F017174AGGAGMYSWQNPNDRVLIAQMNSELQHAQLELLSAHCAAHQLRLRFSTDDLARFGQRDILRKSVQAATALSEYYASIEKKIPSAEAAAPLTPPTEKQILDAVARVASFLRQQREYYLHSAVPLSNHQKAIMWPYFSADLLERVRVVELQGKRLPNPPFYEEYRALGFVNLPDIPHMHSLTCLDVVVFNEKVAERTLFHGLVHTVQFEVLGLERYSDLFVRSFVNTKLHFSVPLEAHTFSLESKFAGTPAQPFSVEDQVRLWVRQKRY
Ga0210390_1000000377F000954N/AMPAPPAAVKKGLLIIIAVVLAPILLVGVVALAAGDWRQIGATPNGDQILVSSVTSHKNGLRTAWVRVEYKEPTKLPQGGPFVELRARVRFNCASGSGLSSVVANSEWLYSRDHSGKLVVSKKIHHDDQFGLVSEGNFGGIARDFVCTQK
Ga0210390_10000003770F025334GGAGGMRVPSVTNFFKILIVTFLLAGLRLFAQSCGSGDCQPGVIAGPYSAPQTSENTAANFPVCTSASCRASAWVNDQIEGIDAQQNIGTAYQFYDNVLNLDTNIAVGESAAGENAQVLQWMNSRYLQAFDKVSGQPIFTNSGGTTAVPQNAIAFWPAATQPECQLAAGNVQVIYDRMDNRFILSRRSAYLVGGIVHYAMCIAVSSSSDLSNPQTVWYAYDFKMDTVLPCVPSSNNCIAGTTYYFPDWPRIGTWSNGFYITFDLEDPTEGFTEAGFEACQLDRADMALGHAAKPMTCYTYLVPVADQPTLIHSLDVADIDSASGPSSGEPEYFLGIVNPSNAQQGGNGQTVCTSAITPCTSNQLALFTWGASGLAGPKFIPVNSYTPGCYDTSGAGTETNTVCVPEPSTNPATIEAYGSPSCGDFNTPCVDSLGDRMANRLTYNNFSVAGIDLEFLTASHVVMESAANQSTGIRYYILGVSNGNAFPLINSGSSGEVGPADLADPNHTLFYFMPSAALDKYGNLGMTYTVSGAYCSTCRVQPNPAVYFDVLPLGISNFGQVSPIVAGTGDEESTFHWGEYAATVIDPTDNLTFYGVGEYFNTSEIGTNNCTQPASDCYTWQTRIFRAKAAF
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