Scaffold Ga0210390

Basic Information
Taxon OID	3300021474 Open in IMG/M
Scaffold ID	Ga0210390_10000004 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	733933
Total Scaffold Genes	662 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	502 (75.83%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (77.78%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

733933

Total Scaffold Genes

662 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

502 (75.83%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (77.78%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Massachusetts

Coordinates

Lat. (^o)

42.481016

Long. (^o)

-72.178343

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000515	Metagenome / Metatranscriptome	1062	Y
F003240	Metagenome / Metatranscriptome	498	Y
F005712	Metagenome / Metatranscriptome	392	Y
F011955	Metagenome / Metatranscriptome	285	Y
F016839	Metagenome / Metatranscriptome	244	Y
F022474	Metagenome / Metatranscriptome	214	Y
F026629	Metagenome	197	Y
F028922	Metagenome / Metatranscriptome	190	Y
F065417	Metagenome / Metatranscriptome	127	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0210390_10000004151	F005712	AGGAG	MKSIRKYVYAAVLTVSALNFAPSLASAQEAAGSFILDHEVHWQNAIVPAGKYRFTMGAQGPSELLMVRDVSGHGTGFMLLVTDTEVSHPSDVSRIVVVSRPTGSFVSSLQLPEFGITLHFAVPAETHEIAKTVATTTLSAAR
Ga0210390_10000004255	F011955	GAGG	MSAPVGTRREQPPHAELISIERKDLPEVASFIANQSGRSRDSVEAHLRWFLLKNPALRSEDPLGFGLRAADRLVGCILCSPQLFRCEKQTILLMGSSLFYVDDRHRGYGGRIFLQYCRLGNRYPLFGTSANAEAAALWKAAGARPIPHSDGELFGVLRWPPIAEEVVHRRFSNRLLSALAGSSVAAIAGVLRPLKIDCSSSDKLRPLTSAEQVNDLLQLQNSSTELTAARDLPYLRWRYFSGRDATVAGFAFRSGELDREVFVAVNQRIRGYREQIKTLNVLDVYPEVSPAEWVQIVGALIARYRQRVDAIVLRNQNLEQQELFCEKGFQWRAFEAPSGWFLDRSKLLPTYDWYPVPADGDGLI
Ga0210390_10000004271	F026629	GGA	MKILLVHSEDDPECGPWASMPWDRVIDLGIGGVDSYARWTRQFQCPATALDSLRNGFDDFRQVRNVLCPGYGRLVDEHGLDWWEIMSILVHGEVETLILLRRFVQTLGSQDEVHVSRPGLHASMLQCLLGTRVKVFPLRRGARKGGLGHYVRVANKLSAPQMIDVFWDKYDAGYQFRGRLARKPQPSTRPVVLLPTAYINVSRTGVAYARTFPTENFLLITTRQSGWVPDPPPNVATAWLSSYASVRDRGAEYAEIENRWRSLLREFEGVAEFEILIRMGCLDSFPQRFRRGFEVRDAWRNVLDNEPVQAVLCADDSNPYTRIPLLLARERGLVNIACHHGALDGRYVFKRSYGDVIWAKGKMEEDYLVRRCGVSREKVEIGAPALPANWNALQHSKSTTFRPHLLFISEAFDVSGGRAEEFYRDILPPLADLAQATGRKLIVKLHPAESKRERSSTLARILSVEQKSATRIVAGSLTEELLASAWFGITILSTVAVECAIRGIPCFLCKWLESWPYGYVEQFIRFGVGIGLNHPREIEKIPEYLQQYSVNPDLTENCWQPAAAGRLREILIGSRKILSTAS
Ga0210390_10000004334	F022474	AGGAGG	VKTTLFATALVVALTLSAAAAPKKPLPSQHGVGSAQGGTQWQGHSVPPTLCDPCLFYAGDLNPSDLNAAGFSDENTLLIPGSNTYGAFSPTSTVTVTGIIVNVQADANFDPLTASYDIRSGVSEGNGGTSLASGSGAAAVAATGRNFFGLNEYTVAVQLSAPLTLNPGAYWINATPNCTNGAVDGSCSVGRFFVSNTTEKANNISGQYQPAHEAFLNSAFFGFTWANWCDASLGLNSRQCSGVSFGLTGTP
Ga0210390_10000004362	F016839	GGAGG	MFSVIFTWMMVAWGALSCIYMLRCAWARFPKRDVDDVIPFLYPVDLSLAESLLDPASEFECRWRLGPSQFRAAQRKRMRLYLELTRRMAHNARVLVEYAVAEKSNNPDPRRVSAATDLQERSIEMRLYALLAGARLKFWLLLRSELLTGTPKLSHLRTAGDIDGLQTYSALRTAATAAFVHLPAEARESLTRNL
Ga0210390_10000004385	F000515	N/A	MTHFPQPHSSRRAARVQLGESVLAAIRLEDGRRTKAKLQSISATGGLLQLPRALGSGAFVELAFQTHSGPVHGMAEILSPMRKTTAGVLQPFRFVALEDDDNRRLRTSLDHVADRSWLGKSSLLNVPRTI
Ga0210390_10000004411	F065417	GGAGG	LRKLALLALLAGLFLSCHFATAQQGDIMFGAGTVLSSAPTAQQFATGNIAERGGTYLGISGDVVGFKKRFGINIETSWRASQATYIPGQINYRPILTDFNFLYQPKLGKKTGLDLFGGIGISSARFYYPFATSCSYFSGCINYTSNHEFMQDLGGGIRYYAWHNFFVRPEIHYYHIDGNSQTNIANPGGFSSDNLFRVGASIGYTIGRGD
Ga0210390_10000004584	F003240	N/A	MTAGARKRCDPMGRLPYNWDVLTDEDKQWISQRLEKVETTLLTEFHKWASPVELRQKSHAAALRALDAEVESLSDRLKNLEGR
Ga0210390_10000004627	F028922	AGGGGG	MVSLVRRSILKKFLIVVSCTLLVCVRTPPATAQHATGHTAGGEVHVSPHVPHISISSAPSIYAPISAPRISAPSSAGALRMAGFRPPHRPIRRFPLAFVVYESPFLFRGPFWGLNSCSWATCDLFWSWTLDYTDVSSPGPTNYVSQVYETPVYDYGEERPDRPQLSLKDGTVLNVTDYWLVDDQLHFTMIEEVGTKPAEHAIPFEELDLRTTTDANARRGFRFVLRDEPIEQYLRDHPEGSLPAVTPPHE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0210390_10000004

Overview

Ecosystem & Geography

Associated Families

Sequences