NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210390_10000045

Scaffold Ga0210390_10000045


Overview

Basic Information
Taxon OID3300021474 Open in IMG/M
Scaffold IDGa0210390_10000045 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)127935
Total Scaffold Genes91 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)62 (68.13%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026328Metagenome / Metatranscriptome198Y
F067959Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0210390_1000004547F026328GGAMAAGIAALIHPQVAMPAKTQEVDVGTGKAIIETRRIVNFPWPFSVLLIVAGAGQAILTCKVRHRI
Ga0210390_1000004549F067959GGAGGMEIHKKTGLAVAAALMLSVPIWARTDSAQLVVDHPVTIGTQQLEPGTYNIKANDGDKQVNIVRADNGKVVASVPCEWVQLAQKARQTEVLFNADHVVEIDFSGKTEAVAFR

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