NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210390_10021636

Scaffold Ga0210390_10021636


Overview

Basic Information
Taxon OID3300021474 Open in IMG/M
Scaffold IDGa0210390_10021636 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5236
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014038Metagenome / Metatranscriptome266Y
F027929Metagenome / Metatranscriptome193Y
F029572Metagenome / Metatranscriptome188Y

Sequences

Protein IDFamilyRBSSequence
Ga0210390_1002163610F029572N/AVSGGSVKHMEKRRLRVLKWLGTIPAVGTCTSCNREFKVPLTAMRRIADAQESLKLQFAEHQCEGED
Ga0210390_1002163611F014038N/AMKVTLEDALSLLSKYVEERTPVLAVFVTPSVSVARVTGTIHISVVDGVTPHLIVGKEDGASDQIKFRLSDCNFEYGDFRDATAEDFGAHKFEGFLVVASSRGDTLSLFEIKR
Ga0210390_100216364F027929N/AMKLSKVFPEFKKITTQCELRRTLEFTINRTSYRVEVLYCYSNPKSPWIAQAYSEKRNGWKSVPDFPWVGERNEEAAIRAALSFLEDLHR
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