NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187846_10005081

Scaffold Ga0187846_10005081


Overview

Basic Information
Taxon OID3300021476 Open in IMG/M
Scaffold IDGa0187846_10005081 Open in IMG/M
Source Dataset NameBiofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6725
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm → Microbial Communities From Various Locations To Find New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameBrazil: State of Minas Gerais
CoordinatesLat. (o)-19.8881Long. (o)-43.6761Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014894Metagenome / Metatranscriptome259Y
F036810Metagenome169Y
F045709Metagenome / Metatranscriptome152Y
F070426Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0187846_100050813F014894AGGAMRMSIGVPGISVYFDHSQIKPFLKDHSKKAKELFHERVVPVVIRGTCKALEVVANNTADAHDYLIGKLKTKKSA
Ga0187846_100050814F045709GGAGGLNLTPSQKGSFLAGIGLWVLIWASVWKADDFAQAMRIQRWFNSGRCIRWIGRHKSTSLLGTELVNYGTHGLDPLGVSFSLGGTLVNVLFIYLFLPFLEKLLLRQRGTTHVTLP
Ga0187846_100050815F070426GAGGMLIELIVATEASVLSASWIRRSRIRRRQILQGVSTPEIHLPFLDRFLRQQTTNPTWLQSFAARKLAMVCRHAVQTRAFELLVLKLIQSASRRSRQEAEMSKVEVIL
Ga0187846_100050816F036810AGGAGMSQPDAGRVSRWMRLQSFAVGKYKSVQLSIERRSFEGTLERIVRVALAHQSLGLPVGHPQYTLLREQADSTCAKFAQRWTVDPNLLEAQIPAIGKLKSLADPTSKVKRAVLVSAGTAGVLALFFLIGVLAGLTSIGYHLMRGR
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