NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187846_10013866

Scaffold Ga0187846_10013866


Overview

Basic Information
Taxon OID3300021476 Open in IMG/M
Scaffold IDGa0187846_10013866 Open in IMG/M
Source Dataset NameBiofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3826
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm → Microbial Communities From Various Locations To Find New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameBrazil: State of Minas Gerais
CoordinatesLat. (o)-19.8881Long. (o)-43.6761Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002845Metagenome / Metatranscriptome526Y
F008214Metagenome / Metatranscriptome337Y

Sequences

Protein IDFamilyRBSSequence
Ga0187846_100138661F002845N/AMHLLLRSERLYDRNHPRRLESLDSSYETLRNFASALNGFEITIERGGLVAPKLSEGHLPDAKGDLQALALDLQRAGIQSLAFARQFHVGELDTLAQLFKASLLRSEESIKRGGHAWWSARLLENRVEGITVNTQTERRVDTVLASLIGALVAYGGNSPREAGEEPIRPPEFDDLAAALRLLARLTPPLESARGLSPEEAARGIHGAMEDASRETVRMLLSSISQYAPREGERPQPYLLRLSEILVMEFLSAEFSAGTLPPAAVRPKFHRLGDVLVASGGYSGPHSSQHLSLLATTWATDTHREQLIEKFWTELPPREKSAVLRGPEIWCVPVVALKQTLGQLAETGADAPRREARNILLNFARRLENEDAAARRSVAAGLNEMTPIIESLWPNQLPEDLSRGTMKALEKEAIPENGALLAAFLETLGRIAVNRGDYAGLE
Ga0187846_100138664F008214GGAGVKQITLRILVLGAALAFLSPAIQSQQPQKAPRLTQEDRIKKLEERADAAEKAASAAAMEKDYITRIQKQYESYYQKVLTTQLWTLVIIGLILTGVFVLVARFSLKMIDEQTKTATAGATVQMRNEYARALAKEVQKLSDS
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