NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210402_10000016

Scaffold Ga0210402_10000016


Overview

Basic Information
Taxon OID3300021478 Open in IMG/M
Scaffold IDGa0210402_10000016 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)151223
Total Scaffold Genes136 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)121 (88.97%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)8 (100.00%)
Associated Families8

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001352Metagenome / Metatranscriptome717Y
F003596Metagenome / Metatranscriptome478Y
F005124Metagenome / Metatranscriptome411Y
F007233Metagenome / Metatranscriptome355Y
F016200Metagenome / Metatranscriptome249Y
F018423Metagenome / Metatranscriptome235Y
F020266Metagenome225Y
F082760Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0210402_10000016109F007233AGGAGMAKRKHERQERKLNLDTFKRSIRGKVLEAVSITNELESRYISLEFQDQTELTITLDVRLTGKLELFDCKTGDQRLVRKIGLVPDDTPLWRPQG
Ga0210402_100000166F018423GAGMRGTHGVALAVLAYTSLTFAQNDLPTFSAESASAFVWGDDNPSNTVSSSIHDPLTGNVIHKLSHAGIEVSSQAGFESIGYGAAGELLSFTTTIANNTESDLSVRRGGASIDGHLAFPLSVVPTTKGLAKRKRTQVWELTKMTCFLSGFLAHENYFSPNDTSKVFTIPPKSASKISFITQDPRKYPFRCSMEGCYPTGTTRFYVTINATDYIFVWQGRSSINCGK
Ga0210402_1000001671F082760GGAGMRKKVFSATSLLLTTSLSLIAIAQQGTGATAPQTTTVKGHGCIKPGSVSGCYVVNDYKAHRKYNVFFRDAKPDMDTGISFEGIAYGHRDPHCNQGQKVDVTEWKPLAGECPQTEKK
Ga0210402_1000001682F020266GGAGMKRLLPLVLLVAVAAEPQNAPMEKPCIAFSQESDSPTNASAKAPLEAAVMKSGDFDFYPSRHDGCWTVHVLSLPINNAKGRAMGYAISQTVTDPESVEVGHALTFGPGREIFLRAMNRAVADAIRSIRLARAREPRNQLR
Ga0210402_1000001693F003596AGGMMLKLLIKVGVSALVLMLAALPVAACVLPGAAMTSAERECCKKMAEQCGDMRMAKSHPCCKATATPADFHALKTVSAQLDHVSLVLFHALPLTSQTDAYHSLAQWSSRVSCTHSPPGLESLTTTVLRI
Ga0210402_1000001695F001352GAGGMSSRELSPEWVLSSFIPPIAAPQHEISELIVVARRLWPRIQAHAHREQPGKGSDEALDFASEVWEGVLRSVAKTIQRSNGRNWRIKNMEAYLFGAFHHRFNRALKKERRRLQTIHHLPSSRDLERLRQAHDSKAVRDLEQSIQLKEAVRNMDEWTRKVWAARQYGYSWKEIATQLGLTEPQAKLRFRYAIGKLRARLGGAM
Ga0210402_1000001696F016200AGCAGGVRNRPQVQTAAVVVLDLRDRATVRGVGPPETSQLPLEVPRNARTLNLELPIGSNEGAYEMALLDPSGAELFRTSSTAKLEDHIVVLRADVAFVGISPGLYFLGLRQPGLEWMRFPVRVL
Ga0210402_1000001698F005124AGGVVLRTCTVAVKDVRDVEHSVEVTAETLYEAIATALATLQQDNWVGEIGQGFTTVTVAVQQPPVKHEVKMKDFVSWLGRQGRSPAEVVLKQKLEKILGKVNQARR
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