NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210402_10000216

Scaffold Ga0210402_10000216


Overview

Basic Information
Taxon OID3300021478 Open in IMG/M
Scaffold IDGa0210402_10000216 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)67059
Total Scaffold Genes67 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)43 (64.18%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002324Metagenome571Y
F008640Metagenome330Y

Sequences

Protein IDFamilyRBSSequence
Ga0210402_1000021633F002324GGAGGMGDIKLFQVCYEGELTVRVSDAMRRLGAEANFDQSWNVWVPEGGHAELLVRYLRIEVGEDARVLVGCSQFTSSRDFLLVRHSLTPGSDYSELHDAIARLGVVVELPFESTFVVQSDDRTDVHTLGLALGELCPDDALFITGISHDWAYCDGTTSRMYVAEQEPKSLQFRSF
Ga0210402_1000021649F008640AGGAGLDESTRSRIRHIFLSPRPYFALMTAADLLGMTFKELKREIEDGGIVAVSTALGQRMTREELVAVAMEKWEQSVIEAALGKDAAAVLPEAIRLVELRARVPRYQRDVIRALARREGTSVDAVLTRELEDVACSYRDELAASVPELAAALAWPEGVGVRAN
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