NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210402_10031557

Scaffold Ga0210402_10031557


Overview

Basic Information
Taxon OID3300021478 Open in IMG/M
Scaffold IDGa0210402_10031557 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4580
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001426Metagenome / Metatranscriptome697Y
F003382Metagenome / Metatranscriptome490Y
F024147Metagenome / Metatranscriptome207Y

Sequences

Protein IDFamilyRBSSequence
Ga0210402_100315571F001426GGAMRSWTPQTLYNAKPWAFMLVGAILGIGMMLWSLSAGAWTVWRGLLCLGGAGLAIVGGATLQMRQDYRAKSKWRRDAPP
Ga0210402_100315572F003382N/AMALKFAQLAEERPWAAELVAAGVGLLLGITLMPVLIFYAGVAALGRFDGATLGHLYSSLFEGLKEASIASWVVFLGPYGLYLLLRALRSWWRASAKLN
Ga0210402_100315574F024147GAGGMASDHGNSGESDSDFTFAVRELRQARVAKTLALDPGPRKPSYKEQGADPYNSSGSFDRTKNWTRVGKR
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